All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs). Assembly Frex.0_4 # contigs (>= 0 bp) 89285 # contigs (>= 1000 bp) 39735 # contigs (>= 5000 bp) 13653 # contigs (>= 10000 bp) 10818 # contigs (>= 25000 bp) 7813 # contigs (>= 50000 bp) 5118 Total length (>= 0 bp) 875243685 Total length (>= 1000 bp) 842125356 Total length (>= 5000 bp) 794057729 Total length (>= 10000 bp) 773057002 Total length (>= 25000 bp) 724197865 Total length (>= 50000 bp) 621960572 # contigs 89285 Largest contig 696341 Total length 875243685 GC (%) 34.28 N50 98766 N75 42925 L50 2526 L75 5862 # N's per 100 kbp 19269.39 # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb10 (Creation date: 2019-11-20, number of species: 50, number of BUSCOs: 1614) # To reproduce this run: python /isg/shared/apps/busco/3.0.2b/scripts/run_BUSCO.py -i ./genome/Frex.0_4.fa -o busco_out -l /isg/shared/databases/BUSCO/odb10/embryophyta_odb10/ -m genome -c 1 -sp arabidopsis # # Summarized benchmarking in BUSCO notation for file ./genome/Frex.0_4.fa # BUSCO was run in mode: genome C:93.8%[S:83.0%,D:10.8%],F:3.2%,M:3.0%,n:1614 1514 Complete BUSCOs (C) 1339 Complete and single-copy BUSCOs (S) 175 Complete and duplicated BUSCOs (D) 51 Fragmented BUSCOs (F) 49 Missing BUSCOs (M) 1614 Total BUSCO groups searched