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EnTAP Run Information - Execution
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Current EnTAP Version: 1.0.0
Start time: Tue Mar 26 17:01:01 2024

Working directory has been set to: /isg/treegenes/treegenes_store/FTP/.genomes_temp/Jeff/Prav/v1.0/work/2d/a3e730d19d183eeae7163efc2e2df6/entap_outfiles
User Inputs:
out-dir: /isg/treegenes/treegenes_store/FTP/.genomes_temp/Jeff/Prav/v1.0/work/2d/a3e730d19d183eeae7163efc2e2df6/entap_outfiles
config: false
runP: true
runN: false
overwrite: false
ini: entap_config.ini
input: protein.faa
database: /isg/shared/databases/Diamond/RefSeq/complete.protein.faa.216.dmnd,
graph: false
no-trim: false
threads: 12
state: 4x
no-check: false
output-format: 1,3,4,7,
api-taxon: 
entap-db-bin: /core/labs/Wegrzyn/EnTAP/EnTAP_v0.10.8/EnTAP/databases/entap_database.bin
entap-db-sql: entap_database.db
entap-graph: /home/FCAM/jgamer/.nextflow/assets/TreeGenes/New_Genome_Pipeline/bin/entap_graphing.py
data-generate: false
data-type: 0,
fpkm: 0.500000
align: 
single-end: false
rsem-calculate-expression: /usr/local/bin/rsem-calculate-expression
rsem-sam-validator: /usr/local/bin/rsem-sam-validator
rsem-prepare-reference: /usr/local/bin/rsem-prepare-reference
convert-sam-for-rsem: /usr/local/bin/convert-sam-for-rsem
complete: false
frame-selection: 2
genemarkst-exe: gmst.pl
transdecoder-long-exe: /usr/lib/TransDecoder-v5.5.0/TransDecoder.LongOrfs
transdecoder-predict-exe: /usr/lib/TransDecoder-v5.5.0/TransDecoder.Predict
transdecoder-m: 100
transdecoder-no-refine-starts: false
diamond-exe: diamond
taxon: Prunus
qcoverage: 60.000000
tcoverage: 60.000000
contam: bacteria,fungi,
e-value: 0.000010
uninformative: conserved,predicted,unknown,unnamed,hypothetical,putative,unidentified,uncharacterized,uncultured,uninformative,,
ontology: 0,
eggnog-sql: /isg/shared/databases/eggnog/4.1/eggnog.db
eggnog-dmnd: /isg/shared/databases/eggnog/4.1/eggnog4.clustered_proteins.dmnd
interproscan-exe: /usr/local/interproscan/interproscan.sh
protein: 

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Transcriptome Statistics
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Protein sequences found
Total sequences: 35009
Total length of transcriptome(bp): 50636232
Average sequence length(bp): 1446.00
n50: 1743
n90: 786
Longest sequence(bp): 16116 (XP_021817171.1)
Shortest sequence(bp): 156 (XP_021819041.1)