File explanations:

kmers_of_all_probes_genome_analyzed.txt --> Kmer to its mapping rate in genome.

kmers_to_probes.pl --> Takes in kmer_to_genome_prevalence_table.txt and creates kmer_to_genome_prevalence_table.txt. Tallies each of a probe's
        kmers to that particular kmer mapping rate.

kmer_test.pl --> First step. Takes in probes created from 70_mer_probes_just_print.pl that have no IUPACS and creates kmers_of_all_probes_genome_analyzed.txt. 
	Kmers are 18bt in length and right column is how many times the sequence was hit in the sliding window. 

kmer_to_genome_prevalence_table.txt --> Probe kmer to its mapping rate in genome. Probe identified. 

overlap_table_to_scaffpos_full.pl --> Creates variant_to_mapping_score.txt from kmers_of_all_probes_genome_analyzed.txt.

stats_on_final_alignment.pl --> Creates statistics

variant_to_mapping_score.txt --> Variant scaffold position to its hit score. Higher number means the probe has sequence that is less unique. Used as input
	For final probe creation as a score of 286 or higher means the variant is a HIGHMAP