File explanations:

70_mer_probes_just_print.pl --> Acts like a probe creation script. However, no IUPAC scores are printed, just reference bases. 
	Run as: perl 70_mer_probes_just_print.pl pseudo_vcf_strict.vcf pseudo_vcf_standard.vcf

no_Nn_probes.txt --> SNP_probes.txt but without N bases

pseudo_vcf_standard.vcf --> vcf creates with CTGN SNP addition. Standard freebayes qualities.

pseudo_vcf_strict.vcf --> vcf creates with CTGN SNP addition. Strict freebayes qualities.

scored_SNPs.txt --> Output of 70_mer_probes_just_print.pl
SNP_probes.txt --> Output of 70_mer_probes_just_print.pl. Goes onto kmer testing.