Tripal Plant PopGen Submission Sets (TPPS)

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Tripal Plant PopGen Submissions

This page reflects community submissions associated with published studies. Each submission is associated with a longterm identifier that connects the genotype, phenotype, and/or environmental metrics assessed. These studies represent diversity assessements, association mapping, and landscape genomics. We accept studies with a variety of marker types. We encourage you to submit your study to TreeGenes and utilize the provided accession in your publication. We currently have 163 studies representing species. Studies that have georeferenced accessions associated with them can be queried on CartograTree.

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Accession	Title	Species	Population Size	Phenotypes Assessed	Phenotypic Measures	Genotype Count
TGDR484	The Development and Use of Isoscapes to Determine the Geographical Origin of Quercus spp. in the United States	Quercus alba	88	4	348
TGDR497	New Test Study	Acacia mangium	96
TGDR499	ok	Populus alba	74			1184
TGDR507	Sexual homomorphism in dioecious trees: extensive tests fail to detect sexual dimorphism in Populus	Populus balsamifera Populus trichocarpa	1378	1	1477	62034
TGDR509	The palaeoendemic conifer Pherosphaera hookeriana (Podocarpaceae) exhibits high genetic diversity despite Quaternary range contraction and post glacial bottlenecking	Pherosphaera hookeriana	603			20985
TGDR510	The extent and meaning of hybridization and introgression between Siberian spruce (Picea obovata) and Norway spruce (Picea abies): cryptic refugia as stepping stones to the west?	Picea abies Picea abies x Picea obovata Picea obovata	1299			25980
TGDR511	Development of genomic tools in a widespread tropical tree, Symphonia globulifera L.f.: a new low-coverage draft genome, SNP and SSR markers	Symphonia globulifera L.f.	124			4022
TGDR513	Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis)	Zea mays	956			469396
TGDR515	Genome-wide signatures of environmental adaptation in European aspen (Populus tremula ) under current and future climate conditions	Populus tremula	115	18	2088	230
TGDR522	Genomic and common garden approaches yield complementary results for quantifying environmental drivers of local adaptation in rubber rabbitbrush, a foundational Great Basin shrub	Ericameria nauseosa	222			8572530
TGDR523	second try of uploading vcf on the cluster	Taxus baccata	120			3087120
TGDR525	Phenotype Study 1	Pinus Tedea	120
TGDR526	A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species	Populus balsamifera Populus trichocarpa	53
TGDR530	Speciation in a keystone plant genus is driven by elevation: a case study in New Guinean Ficus	Ficus arfakensis Ficus hahliana	697	4	2360	1852
TGDR531	Precocious genotypes and homozygous tendency generated by self-pollination in walnut	Juglans sigillata	10	21	210	920
TGDR725	Test study - change tpps type	Arabidopsis thaliana	24	1	24	144
TGDR726	test study - new feature to delete all markers and genotypes	Arabidopsis halleri	444
TGDR727	test study 2 - delete markers and genotypes	Arabidopsis halleri	444
TGDR731	This is a test study about bees	Arabidopsis thaliana	24			144

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Tripal Plant PopGen Submissions

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